18#ifndef __SAM_STATISTICS_H__
19#define __SAM_STATISTICS_H__
34 bool updateStatistics(
SamRecord& samRecord);
47 uint64_t myMappedReadCount;
50 uint64_t myPairedReadCount;
53 uint64_t myProperPairedReadCount;
56 uint64_t myDupReadCount;
59 uint64_t myQCFailureReadCount;
68 uint64_t myMappedReadBases;
Class providing an easy to use interface to get/set/operate on the fields in a SAM/BAM record.