libStatGen Software 1
|
Public Member Functions | |
glfEntry & | operator= (glfEntry &rhs) |
Public Attributes | |
unsigned char | refBase:4 |
"XACMGRSVTWYHKDBN"[ref_base] gives the reference base More... | |
unsigned char | recordType:4 |
unsigned int | offset |
offset of this record from the previous one, in bases More... | |
unsigned | depth:24 |
log10 minimum likelihood * 10 and the number of mapped reads More... | |
unsigned | minLLK:8 |
unsigned char | mapQuality |
root mean squared maximum mapping quality for overlapping reads More... | |
union { | |
unsigned char lk [10] | |
log10 likelihood ratio * 10 for genotypes AA, AC, AG, AT, CC, CG, CT, GG, GT, TT More... | |
glfIndel indel | |
}; | |
Definition at line 42 of file glfHandler.h.
Definition at line 287 of file glfHandler.cpp.
unsigned glfEntry::depth |
log10 minimum likelihood * 10 and the number of mapped reads
Definition at line 51 of file glfHandler.h.
glfIndel glfEntry::indel |
Definition at line 60 of file glfHandler.h.
unsigned char glfEntry::lk[10] |
log10 likelihood ratio * 10 for genotypes AA, AC, AG, AT, CC, CG, CT, GG, GT, TT
Definition at line 59 of file glfHandler.h.
unsigned char glfEntry::mapQuality |
root mean squared maximum mapping quality for overlapping reads
Definition at line 54 of file glfHandler.h.
unsigned glfEntry::minLLK |
Definition at line 51 of file glfHandler.h.
unsigned int glfEntry::offset |
offset of this record from the previous one, in bases
Definition at line 48 of file glfHandler.h.
unsigned char glfEntry::recordType |
Definition at line 45 of file glfHandler.h.
unsigned char glfEntry::refBase |
"XACMGRSVTWYHKDBN"[ref_base] gives the reference base
Definition at line 45 of file glfHandler.h.