GSD
2.4.2
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Tutorials
HOOMD
File layer
Reference
gsd python package
gsd command line interface
C API
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Contributing
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Additional information
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Index
GSD
»
Index
Index
Symbols
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_
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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
Symbols
--mode mode
read command line option
--schema schema
read command line option
-m mode
read command line option
-s schema
read command line option
_
__version__ (in module gsd)
A
angles (gsd.hoomd.Snapshot attribute)
angles/group (data chunk)
angles/N (data chunk)
angles/typeid (data chunk)
angles/types (data chunk)
angmom (gsd.hoomd.ParticleData attribute)
append() (gsd.hoomd.HOOMDTrajectory method)
application (gsd.fl.GSDFile attribute)
application() (gsd.pygsd.GSDFile property)
B
body (gsd.hoomd.ParticleData attribute)
BondData (class in gsd.hoomd)
bonds (gsd.hoomd.Snapshot attribute)
bonds/group (data chunk)
bonds/N (data chunk)
bonds/typeid (data chunk)
bonds/types (data chunk)
box() (gsd.hoomd.ConfigurationData property)
C
charge (gsd.hoomd.ParticleData attribute)
chunk_exists() (gsd.fl.GSDFile method)
(gsd.pygsd.GSDFile method)
close() (gsd.fl.GSDFile method)
(gsd.hoomd.HOOMDTrajectory method)
(gsd.pygsd.GSDFile method)
configuration (gsd.hoomd.Snapshot attribute)
configuration/box (data chunk)
configuration/dimensions (data chunk)
configuration/step (data chunk)
ConfigurationData (class in gsd.hoomd)
ConstraintData (class in gsd.hoomd)
constraints (gsd.hoomd.Snapshot attribute)
constraints/group (data chunk)
constraints/N (data chunk)
constraints/value (data chunk)
D
diameter (gsd.hoomd.ParticleData attribute)
dihedrals (gsd.hoomd.Snapshot attribute)
dihedrals/group (data chunk)
dihedrals/N (data chunk)
dihedrals/typeid (data chunk)
dihedrals/types (data chunk)
dimensions (gsd.hoomd.ConfigurationData attribute)
E
end_frame() (gsd.fl.GSDFile method)
(gsd.pygsd.GSDFile method)
extend() (gsd.hoomd.HOOMDTrajectory method)
F
file() (gsd.hoomd.HOOMDTrajectory property)
(gsd.pygsd.GSDFile property)
find_matching_chunk_names() (gsd.fl.GSDFile method)
(gsd.pygsd.GSDFile method)
G
group (gsd.hoomd.BondData attribute)
(gsd.hoomd.ConstraintData attribute)
gsd
module
gsd.__main__
module
gsd.fl
module
gsd.hoomd
module
gsd.pygsd
module
gsd_close (C function)
gsd_create (C function)
gsd_create_and_open (C function)
gsd_end_frame (C function)
gsd_error (C type)
GSD_ERROR_FILE_CORRUPT (C var)
GSD_ERROR_FILE_MUST_BE_READABLE (C var)
GSD_ERROR_FILE_MUST_BE_WRITABLE (C var)
GSD_ERROR_INVALID_ARGUMENT (C var)
GSD_ERROR_INVALID_GSD_FILE_VERSION (C var)
GSD_ERROR_IO (C var)
GSD_ERROR_MEMORY_ALLOCATION_FAILED (C var)
GSD_ERROR_NAMELIST_FULL (C var)
GSD_ERROR_NOT_A_GSD_FILE (C var)
gsd_find_chunk (C function)
gsd_find_matching_chunk_name (C function)
gsd_get_nframes (C function)
gsd_handle (C type)
gsd_handle.file_size (C member)
gsd_handle.header (C member)
gsd_handle.open_flags (C member)
gsd_header_t (C type)
gsd_header_t.application (C member)
gsd_header_t.gsd_version (C member)
gsd_header_t.schema (C member)
gsd_header_t.schema_version (C member)
gsd_index_entry_t (C type)
gsd_index_entry_t.frame (C member)
gsd_index_entry_t.M (C member)
gsd_index_entry_t.N (C member)
gsd_index_entry_t.type (C member)
gsd_make_version (C function)
gsd_open (C function)
GSD_OPEN_APPEND (C var)
gsd_open_flag (C type)
GSD_OPEN_READONLY (C var)
GSD_OPEN_READWRITE (C var)
gsd_read_chunk (C function)
gsd_sizeof_type (C function)
GSD_SUCCESS (C var)
gsd_truncate (C function)
gsd_type (C type)
GSD_TYPE_DOUBLE (C var)
GSD_TYPE_FLOAT (C var)
GSD_TYPE_INT16 (C var)
GSD_TYPE_INT32 (C var)
GSD_TYPE_INT64 (C var)
GSD_TYPE_INT8 (C var)
GSD_TYPE_UINT16 (C var)
GSD_TYPE_UINT32 (C var)
GSD_TYPE_UINT64 (C var)
GSD_TYPE_UINT8 (C var)
gsd_upgrade (C function)
gsd_version (gsd.fl.GSDFile attribute)
gsd_version() (gsd.pygsd.GSDFile property)
gsd_write_chunk (C function)
GSDFile (class in gsd.fl)
(class in gsd.pygsd)
H
HOOMDTrajectory (class in gsd.hoomd)
I
image (gsd.hoomd.ParticleData attribute)
impropers (gsd.hoomd.Snapshot attribute)
impropers/group (data chunk)
impropers/N (data chunk)
impropers/typeid (data chunk)
impropers/types (data chunk)
int64_t (C type)
L
log (gsd.hoomd.Snapshot attribute)
log/bonds/user_defined (data chunk)
log/particles/user_defined (data chunk)
log/user_defined (data chunk)
M
mass (gsd.hoomd.ParticleData attribute)
mode (gsd.fl.GSDFile attribute)
mode() (gsd.pygsd.GSDFile property)
module
gsd
gsd.__main__
gsd.fl
gsd.hoomd
gsd.pygsd
moment_inertia (gsd.hoomd.ParticleData attribute)
N
N (gsd.hoomd.BondData attribute)
(gsd.hoomd.ConstraintData attribute)
(gsd.hoomd.ParticleData attribute)
name (gsd.fl.GSDFile attribute)
name() (gsd.pygsd.GSDFile property)
nframes (gsd.fl.GSDFile attribute)
nframes() (gsd.pygsd.GSDFile property)
O
open() (in module gsd.fl)
(in module gsd.hoomd)
orientation (gsd.hoomd.ParticleData attribute)
P
pairs (gsd.hoomd.Snapshot attribute)
pairs/group (data chunk)
pairs/N (data chunk)
pairs/typeid (data chunk)
pairs/types (data chunk)
ParticleData (class in gsd.hoomd)
particles (gsd.hoomd.Snapshot attribute)
particles/angmom (data chunk)
particles/body (data chunk)
particles/charge (data chunk)
particles/diameter (data chunk)
particles/image (data chunk)
particles/mass (data chunk)
particles/moment_inertia (data chunk)
particles/N (data chunk)
particles/orientation (data chunk)
particles/position (data chunk)
particles/type_shapes (data chunk)
particles/typeid (data chunk)
particles/types (data chunk)
particles/velocity (data chunk)
position (gsd.hoomd.ParticleData attribute)
R
read command line option
--mode mode
--schema schema
-m mode
-s schema
read_chunk() (gsd.fl.GSDFile method)
(gsd.pygsd.GSDFile method)
read_frame() (gsd.hoomd.HOOMDTrajectory method)
S
schema (gsd.fl.GSDFile attribute)
schema() (gsd.pygsd.GSDFile property)
schema_version (gsd.fl.GSDFile attribute)
schema_version() (gsd.pygsd.GSDFile property)
size_t (C type)
Snapshot (class in gsd.hoomd)
state (gsd.hoomd.Snapshot attribute)
state/hpmc/convex_polygon/N (data chunk)
state/hpmc/convex_polygon/vertices (data chunk)
state/hpmc/convex_polyhedron/N (data chunk)
state/hpmc/convex_polyhedron/vertices (data chunk)
state/hpmc/convex_spheropolygon/N (data chunk)
state/hpmc/convex_spheropolygon/sweep_radius (data chunk)
state/hpmc/convex_spheropolygon/vertices (data chunk)
state/hpmc/convex_spheropolyhedron/N (data chunk)
state/hpmc/convex_spheropolyhedron/sweep_radius (data chunk)
state/hpmc/convex_spheropolyhedron/vertices (data chunk)
state/hpmc/ellipsoid/a (data chunk)
state/hpmc/ellipsoid/b (data chunk)
state/hpmc/ellipsoid/c (data chunk)
state/hpmc/integrate/a (data chunk)
state/hpmc/integrate/d (data chunk)
state/hpmc/simple_polygon/N (data chunk)
state/hpmc/simple_polygon/vertices (data chunk)
state/hpmc/sphere/orientable (data chunk)
state/hpmc/sphere/radius (data chunk)
step (gsd.hoomd.ConfigurationData attribute)
T
truncate() (gsd.fl.GSDFile method)
(gsd.hoomd.HOOMDTrajectory method)
(gsd.pygsd.GSDFile method)
type_shapes (gsd.hoomd.ParticleData attribute)
typeid (gsd.hoomd.BondData attribute)
(gsd.hoomd.ParticleData attribute)
types (gsd.hoomd.BondData attribute)
(gsd.hoomd.ParticleData attribute)
U
uint32_t (C type)
uint64_t (C type)
uint8_t (C type)
upgrade() (gsd.fl.GSDFile method)
V
validate() (gsd.hoomd.BondData method)
(gsd.hoomd.ConfigurationData method)
(gsd.hoomd.ConstraintData method)
(gsd.hoomd.ParticleData method)
(gsd.hoomd.Snapshot method)
value (gsd.hoomd.ConstraintData attribute)
velocity (gsd.hoomd.ParticleData attribute)
W
write_chunk() (gsd.fl.GSDFile method)
(gsd.pygsd.GSDFile method)